Table 1 The BCR H-CDR3 repertoire of productive, pseudogene, and out-of-frame sequences in mice of different ages
Sample | Productive Total (unique) | Pseudogene Total (unique) | Out of frame Total (unique) |
|---|---|---|---|
M3BM1 | 3,662,734 (474483) | 107,165 (20484) | 350,156 (89830) |
M3BM2 | 4,201,156 (522977) | 128,828 (21769) | 331,242 (87427) |
M3BM3 | 772,633 (386000) | 16,473 (16473) | 137,409 (75974) |
M3BM4 | 1,357,086 (177848) | 50,529 (8549) | 305,304 (54945) |
M3BM5 | 1,296,498 (178251) | 42,892 (8104) | 348,632 (61586) |
M12BM1 | 1,438,032 (197994) | 35,419 (6960) | 97,826 (30317) |
M12BM2 | 1,477,622 (156699) | 58,100 (8877) | 231,830 (45326) |
M12BM3 | 502,958 (64768) | 16,480 (2915) | 98,908 (20059) |
M12BM4 | 1,108,553 (184165) | 34,074 (7926) | 207,506 (51285) |
M12BM5 | 1,669,642 (170188) | 66,465 (8764) | 324,449 (50027) |
M20BM1 | 1,494,519 (242290) | 39,108 (9174) | 400,643 (87675) |
M20BM2 | 1,316,534 (199635) | 45,487 (9149) | 277,021 (58823) |
M20BM3 | 561,490 (120788) | 19,500 (5264) | 120,708 (31740) |
M20BM4 | 429,629 (76188) | 11,326 (2883) | 78,493 (17853) |
M20BM5 | 313,694 (67759) | 8452 (2542) | 48,381 (13366) |
M3S1 | 4,523,881 (786508) | 149,238 (33361) | 865,160 (208318) |
M3S2 | 4,017,413 (682554) | 108,054 (25438) | 663,139 (213543) |
M3S3 | 4,417,442 (637351) | 137,097 (28256) | 784,674 (160134) |
M3S4 | 3,942,536 (606347) | 97,789 (22957) | 808,071 (164970) |
M3S5 | 2,696,776 (571503) | 63,029 (18062) | 446,298 (122955) |
M3S7 | 1,091,791 (91001) | 44,851 (4866) | 226,582 (27110) |
M3S8 | 46,895 (12469) | 1165 (446) | 6682 (2261) |
M3S9 | 183,534 (27923) | 5709 (1241) | 34,871 (6784) |
M12S1 | 1,044,884 (101677) | 15,109 (3242) | 266,668 (20675) |
M12S2 | 1,365,544 (280774) | 42,482 (11209) | 212,575 (60657) |
M12S3 | 1,382,706 (226375) | 28,890 (7327) | 217,936 (51437) |
M12S4 | 1,555,800 (265748) | 23,832 (7127) | 329,043 (70801) |
M12S5 | 1,441,200 (201908) | 24,061 (5619) | 267,609 (51811) |
M12S7 | 737,198 (137061) | 44,046 (7571) | 57,282 (21271) |
M12S8 | 880,181 (169410) | 14,891 (4214) | 65,870 (23320) |
M12S9 | 77,364 (11970) | 1056 (330) | 4592 (1626) |
M20S1 | 1,296,983 (134233) | 24,433 (4355) | 564,603 (37880) |
M20S2 | 1,646,868 (205593) | 43,362 (8512) | 235,117 (46844) |
M20S3 | 535,873 (125903) | 10,757 (3624) | 100,049 (29217) |
M20S4 | 1,000,811 (172421) | 22,525 (5906) | 246,581 (49540) |
M20S5 | 579,776 (156417) | 16,389 (5813) | 116,676 (36376) |
M20S7 | 197,807 (22819) | 5327 (923) | 114,176 (6685) |
M20S8 | 717,148 (68896) | 18,116 (2575) | 634,418 (24260) |
M20S9 | 55,512 (6239) | 2232 (327) | 11,120 (1928) |