Table 1 Summary of the viruses detected in the analysed blood samples (N = 317)
Species | Virus subtype of reference sequence | GenBank accession of reference sequence | Sequence positive samples | Mean sequence abundance in species positive samples | Number of species positive samples | Mean species abundance in species positive samples |
|---|---|---|---|---|---|---|
Epstein-Barr virus | HKNPC1 (EBV type 1) | JQ009376 | 63 | 0.659 | 68 | 1.414 |
M81 | KF373730 | 49 | 0.421 | |||
IM-3 | MK973061 | 32 | 0.219 | |||
HN4 | AB850649 | 19 | 0.076 | |||
NKTCL-SG05 | MH144216 | 3 | 0.016 | |||
Akata (EBV type 1) | KC207813 | 3 | 0.012 | |||
variant BZLF1-C (EBV type 1) | KF826537 | 2 | 0.007 | |||
undefined (LMP mRNA) | M58153 | 1 | 0.005 | |||
Herpes simplex virus 1 | MacIntyre | MN136523 | 5 | 3.588 | 5 | 22.200 |
F | GU734771 | 5 | 3.532 | |||
isolate HSV-v29_day1_culture2 | MG708287 | 5 | 1.740 | |||
F-13 | MH999842 | 5 | 1.537 | |||
KOS, variant Kinchington | JQ780693 | 5 | 1.535 | |||
RDH193 | KT425108 | 5 | 1.533 | |||
unknown (dbp/pol genes) | X03181 | 5 | 1.387 | |||
McKrae | JQ730035 | 5 | 1.258 | |||
CM1 | KX791792 | 5 | 1.226 | |||
K86 | MH999839 | 5 | 0.964 | |||
isolate HSV-v29_day-90_culture1 | MG708286 | 5 | 0.907 | |||
isolate ZW6 | KX424525 | 5 | 0.571 | |||
M-19 | MH999850 | 5 | 0.541 | |||
17 | NC_001806 | 5 | 0.474 | |||
isolate 1319_2005 | LT594108 | 5 | 0.396 | |||
isolate HSV-v29_site12_day3 | MG708289 | 4 | 0.245 | |||
K47 | MH999838 | 3 | 0.236 | |||
OD4 | JN420342 | 3 | 0.205 | |||
McKrae, clone contig00012 | KX791997 | 2 | 0.165 | |||
F-18 g | MH999847 | 2 | 0.091 | |||
isolate B^3 × 1.5 | KU310661 | 1 | 0.035 | |||
isolate B^3 × 1.3 | KU310659 | 1 | 0.035 | |||
Human cytomegalovirus | AD169 | FJ527563 | 5 | 0.249 | 6 | 0.647 |
Towne | LT907985 | 4 | 0.367 | |||
U11 | GU179290 | 1 | 0.031 | |||
Human mastadenovirus C | serotype 57 | HQ003817 | 3 | 0.419 | 3 | 1.230 |
serotype 6, isolate Tonsil 99 | HQ413315 | 2 | 0.398 | |||
serotype 1, strain SH2016 | MH183293 | 2 | 0.346 | |||
serotype 2 | MF315029 | 1 | 0.066 | |||
Torque teno virus 13 | isolate TCHN-A | AF345526 | 3 | 0.848 | 3 | 0.848 |
Betapapillomavirus 1 | serotype 195, isolate ACS380 | KR816182 | 2 | 0.438 | 3 | 0.616 |
serotype 98 | FM955837 | 1 | 0.178 | |||
Betacoronavirus 1 | HCoV_OC43/Seattle/USA/SC9430/2018 | MN306053 | 2 | 0.331 | 2 | 0.331 |
Torque teno virus 29 | isolate TTVyon-KC009 | AB038621 | 2 | 0.310 | 2 | 0.310 |
Betapapillomavirus 4 | isolate Beta04_TVMGc2024 | MF588686 | 1 | 0.960 | 1 | 0.960 |
Gammapapillomavirus 1 | serotype 4 | NC_001457 | 1 | 0.896 | 1 | 0.896 |
Gammapapillomavirus 9 | isolate Gamma09_w27c39c | MF588712 | 1 | 0.426 | 1 | 0.426 |
Betapapillomavirus 2 | serotype 23 | U31781 | 1 | 0.190 | 2 | 0.337 |
serotype 107 | EF422221 | 1 | 0.147 |